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Getting start

Installation
Database Description
Quick Start Guide

User guide

Preparing Databases
CAZyme Annotation
SignalP 6.0 and DeepTMHMM (optional tools)
CAZyme Gene Cluster (CGC) Annotation
CAZyme Gene Cluster (CGC) Identification
CGC Substrate Prediction
CAZyme Gene Cluster Visualization

Comparison

CAZyme annotation comparison

API

API Documentation

Metagenomics pipeline

Run from Raw Reads(Cater 2023): Automated CAZyme and Glycan Substrate Annotation in Microbiomes: A Step-by-Step Protocol
Run from Raw Reads(Amelia 2024): Automated CAZyme and Glycan Substrate Annotation in Microbiomes: A Step-by-Step Protocol
Run from Raw Reads(Priest 2023): Automated CAZyme and Glycan Substrate Annotation in Microbiomes: A Step-by-Step Protocol
Run from Raw Reads(Wastyk 2021): Automated CAZyme and Glycan Substrate Annotation in Microbiomes: A Step-by-Step Protocol
Run from Raw Reads(Emilson 2024): Automated CAZyme and Glycan Substrate Annotation in Microbiomes: A Step-by-Step Protocol
Run from Raw Reads(Cater 2023): Supplementary Protocol for co-assembly
Run from Raw Reads(Cater 2023): Supplementary Protocol for subsample
Run from Raw Reads(Cater 2023): Supplementary Protocol for assembly-free

Nextflow Pipeline

Nextflow Pipeline Documentation

Change logs

Change Logs

References

References

Contributors

Contributors

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By Xinpeng Zhang, Haidong Yi, Le Huang, Jinfang Zheng, Qiwei Ge, Tanner Yohe

© Copyright 2026, Xinpeng Zhang, Haidong Yi, Le Huang, Jinfang Zheng, Qiwei Ge, Tanner Yohe..